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La-Proteina

La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching Abstract. Recently, many generative models for de novo protein structure design have emerged. Yet, only few tackle the difficult task of directly generating fully atomistic structures jointly with the underlying amino acid sequence. This is challenging, for instance, because the model must reason over side chains that change in length during generation. We introduce La-Proteina for atomistic protein design based on a n

Overengineering my homelab so I don't pay cloud providers

After years of self-hosting on a VPS in a datacenter, I’ve decided to move my services at home. But instead of just porting services, I’m using this as an opportunity to migrate to a more flexible and robust set up. I will deploy services on a single mini pc. Since I need to be able to experiment and learn without disrupting my services, I will need to be able to spin up Virtual Machines (VMs). Let’s explore how I deployed Proxmox Virtual Environment on a safe host for my specific needs as a ho

Over engineering my homelab so I don't pay cloud providers

After years of self-hosting on a VPS in a datacenter, I’ve decided to move my services at home. But instead of just porting services, I’m using this as an opportunity to migrate to a more flexible and robust set up. I will deploy services on a single mini pc. Since I need to be able to experiment and learn without disrupting my services, I will need to be able to spin up Virtual Machines (VMs). Let’s explore how I deployed Proxmox Virtual Environment on a safe host for my specific needs as a ho

VSCode extension for syntax highlighting multi-line YAML strings

YAML Embedded Languages Features Syntax highlighting within YAML block-scalars for 50+ built-in languages and the ability to add highlighting for any other language with the yaml-embedded-languages.include configuration setting. Usage To highlight a single block, place a comment with the language identifier next to the block identifier. example : | # <language-identifier> highlighted To highlight all blocks from a point onwards, place a comment with the extension name followed by the langu

JSON is not a YAML subset (2022)

JSON is not a YAML subset People on the internet believe that JSON is a subset of YAML, and that it's safe to parse JSON using a YAML parser: Following this advice will end badly because JSON is not a subset of YAML. It is easy to construct JSON documents that (1) fail to parse as YAML, or (2) parse to valid but semantically different YAML. The second case is more dangerous because it's difficult to detect. False has over "1.7e3" named fjords YAML (infamously) allows string scalars to be unqu

Topics: 1e2 json load parser yaml

Show HN: Xorq – open compute catalog for AI

✨ Xorq is an opinionated framework for cataloging, sharing, and shipping multi-engine compute as diffable artifacts for your data in flight. ✨ Xorq helps teams build declarative, reusable ML pipelines across Python and SQL engines like DuckDB, Snowflake, and DataFusion. It offers: 🧠 Multi-engine, declarative expressions using pandas-style syntax and Ibis. using pandas-style syntax and Ibis. 📦 Expression Format for Python in YAML, enabling repeatable compute. for Python in YAML, enabling repe

Yamlfmt: An extensible command line tool or library to format YAML files

yamlfmt yamlfmt is an extensible command line tool or library to format yaml files. Goals Create a command line yaml formatting tool that is easy to distribute (single binary) Make it simple to extend with new custom formatters Enable alternative use as a library, providing a foundation for users to create a tool that meets specific needs Maintainers This tool is not yet officially supported by Google. It is currently maintained solely by @braydonk, and unless something changes primarily

What would a Kubernetes 2.0 look like

Around 2012-2013 I started to hear a lot in the sysadmin community about a technology called "Borg". It was (apparently) some sort of Linux container system inside of Google that ran all of their stuff. The terminology was a bit baffling, with something called a "Borglet" inside of clusters with "cells" but the basics started to leak. There was a concept of "services" and a concept of "jobs", where applications could use services to respond to user requests and then jobs to complete batch jobs t

What Would a Kubernetes 2.0 Look Like

Around 2012-2013 I started to hear a lot in the sysadmin community about a technology called "Borg". It was (apparently) some sort of Linux container system inside of Google that ran all of their stuff. The terminology was a bit baffling, with something called a "Borglet" inside of clusters with "cells" but the basics started to leak. There was a concept of "services" and a concept of "jobs", where applications could use services to respond to user requests and then jobs to complete batch jobs t