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Autophagy

2 GoKawiil briefs on this topic

RNF213 enzyme found to tag defective glycogen for cellular disposal

Researchers identified RNF213, an E3 ubiquitin ligase, as a key surveillance mechanism that marks poorly branched, disease-causing glycogen (polyglucosan) for destruction via autophagy. Mice lacking RNF213's ligase activity built up polyglucosan deposits in the cerebellum, pons, and hippocampus, and cell studies showed the enzyme selectively ubiquitylates abnormal glycogen while a structural domain restrains it from attacking healthy glycogen. Once tagged, the aberrant glycogen recruits autophagy receptors SQSTM1, TAX1BP1, and optineurin, which shuttle it into autophagosomes for clearance.

Researchers use AlphaFold database to identify TM184C as a GPCR-like regulator

A research team mined all 214.5 million structure predictions in Google DeepMind's AlphaFold database to search for undiscovered 7TM (seven-transmembrane) folds resembling G-protein-coupled receptors. Using the rhodopsin structure as a reference and the TM-align algorithm, they identified TM184C as a previously unrecognized GPCR-like protein involved in regulating cell-to-cell exchange and autophagy. The analysis required processing 24 tebibytes of compressed structural data on university supercomputing clusters.